PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29427
Common NameKK1_029971
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 627aa    MW: 71483.3 Da    PI: 5.1847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29427genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.55e-5751321128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s
  C.cajan_29427   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS 99 
                    79****************************.99***************6434445667************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kktLv+y+grap+g++t+Wvmheyrl
  C.cajan_29427 100 -QTRAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                    .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-653155IPR003441NAC domain
PROSITE profilePS5100562.2135155IPR003441NAC domain
PfamPF023659.5E-316132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MTPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFFSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSQ TRAVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDERECETA SGLQDAYALC RVFKKTAVIT PKVGGHYVNT PNANQITGYQ  180
SSSIELYSEG RGEDLGSSNY SMPMDTCSPH NVGNETSLTI SGGSRDHGNW SHFSSEDPLF  240
SLPTSSFPNF GTMTYPPSRV DIALECARMQ HRFTMPPLEV DDFPQEILSV AHASQELINQ  300
SGYSHEWGGN DNYAPREDDF TFMVGTNYNH LNEMSSMRYV DKTWEDANTR TIEIGDVGEE  360
FKAERMVENL RWVGMSREDL EKMEEQKVVP IEDISSFQTN REENEVQESE QHSNKEHNDT  420
EINDFSLGFI NDDDPNENFI EEGNMNDYSS FPSFEVVEET KVNHGMLVST GQVAKTFFHQ  480
IVPSQTIQVQ LNSVMANNHC VENAEAMLMI MENQGSILRK FRSYVMGKLT KPSKAIASAV  540
VFVFALVLMH CAYLKEEVEI WNETYCSIKR MSQSSEVINW NKSNEVWFVG VKSEKGLSAV  600
LKKIGIFLTI SLALCTMWAN QNMIVNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-56515717167NO APICAL MERISTEM PROTEIN
1ut4_B3e-56515717167NO APICAL MERISTEM PROTEIN
1ut7_A3e-56515717167NO APICAL MERISTEM PROTEIN
1ut7_B3e-56515717167NO APICAL MERISTEM PROTEIN
3swm_A3e-56515720170NAC domain-containing protein 19
3swm_B3e-56515720170NAC domain-containing protein 19
3swm_C3e-56515720170NAC domain-containing protein 19
3swm_D3e-56515720170NAC domain-containing protein 19
3swp_A3e-56515720170NAC domain-containing protein 19
3swp_B3e-56515720170NAC domain-containing protein 19
3swp_C3e-56515720170NAC domain-containing protein 19
3swp_D3e-56515720170NAC domain-containing protein 19
4dul_A3e-56515717167NAC domain-containing protein 19
4dul_B3e-56515717167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-96AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234131.10.0NAC domain-containing protein 86
TrEMBLA0A151S0M80.0A0A151S0M8_CAJCA; NAC domain-containing protein 74
STRINGGLYMA14G39080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-156NAC domain containing protein 28