PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29530
Common NameKK1_027823
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 347aa    MW: 40099.9 Da    PI: 5.3244
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29530genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35141052102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d+++++++sws +++sfvv+++ ef++++Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i
  C.cajan_29530  14 FLTKTYEMVDDPSTNSIVSWSPTNKSFVVWNPPEFSSELLPRFFKHSNFSSFIRQLNTYGFRKIDPEK---------WEFANDDFIRGQPHLLKNI 100
                    9********************999*****************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  C.cajan_29530 101 HRRKP 105
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEAQGSSSS LPPFLTKTYE MVDDPSTNSI VSWSPTNKSF VVWNPPEFSS ELLPRFFKHS  60
NFSSFIRQLN TYGFRKIDPE KWEFANDDFI RGQPHLLKNI HRRKPVHSHS LQNVQSQGTF  120
PLTEAERQSL KDEIEKLKQD KAQLLRELER HEQEWKMYEV QLKCSNDRLE KMEKKQENML  180
SSVSQVLQKP GIALNLLQLP ENIMDRKRRL PRSSLYSDSA SIEDHMEISP VLPRQNAQGS  240
SILTSNMERL DLLESSIEFW EEMSHDVDTF LQTVAAVSDL DASKEQPVGT APVAAGVNDI  300
FWEKFLTENP GSSETQSERK DSDSRNNRKF WWNISNVNNL PEQMGHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25910324129Heat shock factor protein 1
5d5v_B1e-25910324129Heat shock factor protein 1
5d5v_D1e-25910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29530
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232351.10.0heat stress transcription factor A-4a
RefseqXP_029130099.10.0heat stress transcription factor A-4a
SwissprotQ9FK721e-108HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A151S6E50.0A0A151S6E5_CAJCA; Heat stress transcription factor A-4c
STRINGGLYMA15G09280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-104HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]