PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_29891

Common Name

KK1_032145

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 231aa MW: 26237.6 Da PI: 8.0756

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_29891	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.3e-14	80	124	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I++ + + Rt+ q+ s+ qky C.cajan_29891 80 PWTEEEHRQFLLGLKKYGKGDWRNISKNFVTSRTPTQVASHAQKY 124 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.335	1	21	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	7.7E-13	71	127	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.592	73	129	IPR017930	Myb domain
SuperFamily	SSF46689	4.35E-17	75	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-17	76	128	IPR006447	Myb domain, plants
SMART	SM00717	6.2E-13	77	127	IPR001005	SANT/Myb domain
CDD	cd00167	2.00E-11	80	124	No hit	No description
Pfam	PF00249	6.8E-12	80	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MIPGKTVGDV IKQYRELEED VCVIEAGLVP VPGYTAAISF TLEWDDNNQG YDEFKQFCSV 60 GGKRGASTRP SEHERKKGVP WTEEEHRQFL LGLKKYGKGD WRNISKNFVT SRTPTQVASH 120 AQKYYIRQLT GGKDKRRSSI HDITMVNLQE TKSPSSDTTR PSSPLQNQKL SSMLKQEYEW 180 KLACEDMPIV FNSTNGSMFM ATPLHGISSY ESRPQEHDLL GQSPWMPVFT L

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_29891

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-149	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236097.1	1e-174	transcription factor DIVARICATA
Swissprot	Q8S9H7	5e-84	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A151RUQ1	1e-174	A0A151RUQ1_CAJCA; Myb-like protein J
STRING	GLYMA18G42530.1	1e-152	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-79	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]