PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30396
Common NameKK1_029702
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 300aa    MW: 32898.5 Da    PI: 7.2378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30396genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10151195554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  C.cajan_30396 151 HSIAERLRRERIAERIRALQELVPSvN------KTDRATMLDEIVDYVKFL 195
                    99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.215146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-11152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANHPSDPPT DDFLEQILGL PTFAPADPAD ASPMMLQLNS ADAATHLPAG PPFHAPPYHL  60
GLSLDQGKGP FLKPEDASGS GKRFRDDLLD TRPKNNLFFV YLRFLSRSLS LRMSSSVFHG  120
QPMPTTVPNA PHPPAVRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD  180
RATMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGN EGRNQPAWEK  240
WSNDGTEKQV AKLMEENVGA AMQFLQSKAL CIMPISLASA IYQSQPSDTS SIVKPETNPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233838.10.0transcription factor UNE12
SwissprotO227681e-121UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A151S1G20.0A0A151S1G2_CAJCA; Transcription factor UNE12
STRINGAES607881e-165(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]