PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30524
Common NameKK1_029552
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 372aa    MW: 41420.3 Da    PI: 6.7968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30524genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14177223354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  C.cajan_30524 177 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 223
                    79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11177223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-15178230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-15178232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-5187226No hitNo description
CDDcd048735.52E-5259303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MKKELEDQGQ CSSQPINNTT NTNTINNNIQ SFQEQLLIQQ QMHHHQQQQN SDIFGGSRGL  60
MFPDQVPPIL QPWSMPPVHS FNSNPVHSFN PNPVRDHDQT FLVPPTPSPY ASFFSRRVPS  120
LQFAYEGPSS DHHHLRIISD TLGPMVQTGS AAFGLQAELG KMTAQEIMEA KALAASKSHS  180
EAERRRRERI NNHLAKLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTES  240
DELTVDAADE DGKFVIKASL CCEDRSDLLP DLIKTLKALR LRTLKAEITS LGGRVKNVLV  300
ITGDDDNNNN NSNTNGEQSM QQQQQQYCIS SIQEALKAVM EKSGGDESAS GNVKRQRTNT  360
NNNINILEQR SL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-139AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233703.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-113BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A151S1S50.0A0A151S1S5_CAJCA; Transcription factor bHLH30
STRINGGLYMA01G22530.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]