PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_30824

Common Name

KK1_034327

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 150aa MW: 17333.1 Da PI: 5.2061

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_30824	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.8e-12	64	105	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W t+E+ ll+++++++G g+W+ + +++g +++ qc+++++ C.cajan_30824 64 DWNTDEEMLLLEGIEMYGFGNWNEVTEYVG-TKSKFQCIDHYN 105 5***************************.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00291	7.4E-10	1	46	IPR000433	Zinc finger, ZZ-type
CDD	cd02335	3.04E-22	5	53	No hit	No description
PROSITE profile	PS50135	10.587	5	48	IPR000433	Zinc finger, ZZ-type
Pfam	PF00569	1.3E-9	5	45	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF57850	3.18E-14	5	68	No hit	No description
PROSITE pattern	PS01357	0	7	34	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	6.06E-13	57	111	IPR009057	Homeodomain-like
PROSITE profile	PS51293	20.224	60	112	IPR017884	SANT domain
SMART	SM00717	4.5E-9	61	110	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-12	64	105	IPR001005	SANT/Myb domain
CDD	cd00167	1.67E-11	65	105	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.7E-8	65	107	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
KVSLYHCNYC NKDISGKIRI KCVLCQDFDL CIECFSVGAE VTPHKSNHPY RTMDNLSFPL 60 MCPDWNTDEE MLLLEGIEMY GFGNWNEVTE YVGTKSKFQC IDHYNAVYMN SPCFPLPDLS 120 HVMGKSREEL FAMVKGREVM KDIVNILQIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw2_C	6e-35	5	120	5	120	Transcriptional adapter 2
6cw3_E	5e-35	5	120	5	120	Transcriptional adapter 2
6cw3_G	5e-35	5	120	5	120	Transcriptional adapter 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_30824

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	2e-55	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237926.1	1e-104	transcriptional adapter ADA2a
Swissprot	Q75LL6	8e-83	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	A0A151RNP5	1e-109	A0A151RNP5_CAJCA; Transcriptional adapter ADA2 (Fragment)
STRING	GLYMA13G11200.2	5e-93	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1537	17	26

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]