PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30924
Common NameKK1_029909
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 801aa    MW: 89170.5 Da    PI: 7.0961
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30924genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18251350198
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l
  C.cajan_30924 251 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKL 344
                    89**************************555567778***************9989999999***9.********************876.77777 PP

                    EEEEE- CS
             B3  93 vvkvfr 98 
                     +++++
  C.cajan_30924 345 IMGFRK 350
                    777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.9E-4243IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.103.8E-29244359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-19248351IPR015300DNA-binding pseudobarrel domain
CDDcd100178.43E-22249350No hitNo description
PROSITE profilePS5086311.166251352IPR003340B3 DNA binding domain
SMARTSM010191.2E-19251351IPR003340B3 DNA binding domain
PfamPF023621.4E-15251350IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655516566IPR011124Zinc finger, CW-type
PfamPF074961.3E-10521563IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MESRSCMNVA CATLTTTRWR KGWTLRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC  60
TSCDKRLHCG CIASMSQLEL LDIGGVSCIN CARNSGLQPI ASNEKPSGSG TSKVNNVGAQ  120
QYTSLANQLN VRGMQVGHYA ENDGLRCWFK PHNVETDGPS TEMKPEILPS TNLSMTLAAP  180
LGNSNHFQSA VVDEREQSKT SPLLLGPRPP AEGRGRNQLL PRYWPRITDQ ELQQISGEYP  240
AFSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI QDVKGKEWMF  300
QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK ATNSTAVQET  360
LPSNMPNGSH SSETSYSGVY ENLPILSGYS GLLQSQKGCS ESHLNALSKK WNSAGGDMNW  420
HSIDMPESRK REGLPLPPVL VPEKKRTRNI GSKSKRLVID SQDALELKLT WEEAQDLLRP  480
PPTVKPSIVM IEDHVFEEYE EPPVFGKRSI FVVRSTGINE QWVQCDSCSK WRKLPIDVLI  540
PPKWTCVENL WDQSRCSCAA PNELNPRELD NLLRLNKEFK KQRLAASQRP ALEHASSGLD  600
ALANAAILGD DANDSGRTPV VTTTKHPRHR PGCSCIVCIQ PPSGKGKHKP TCTCNVCMTV  660
KRRFKTLMMR KKKRQSEREA EIAQRNQLSW RTKDESEVDS TSRQLTPVDE DMQAAPNSMS  720
MTSLLEEANL PLETYLKQNG LTSLISEQQT NSASNVQQAH TTNESEGRRN EDCCTASVIH  780
EQESSPEENS GQDKDQNNSL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-672253582131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1660671KRRFKTLMMRKK
2660673KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_30924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234070.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A151S0U20.0A0A151S0U2_CAJCA; B3 domain-containing transcription repressor VAL2
STRINGGLYMA03G04330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]