PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31231
Common NameKK1_029795
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 85aa    MW: 9973.97 Da    PI: 7.7806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31231genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-081659344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ +a +++  +   +W  Ia+ +g  ++++++k ++
    C.cajan_31231 16 SWTRMQNKQFERALALYDRDtpdRWQNIAKVVG-DKSAEEVKRHY 59
                     7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.62963IPR017877Myb-like domain
SMARTSM007177.3E-81365IPR001005SANT/Myb domain
SuperFamilySSF466896.61E-131669IPR009057Homeodomain-like
PfamPF002492.9E-61659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-81669IPR009057Homeodomain-like
CDDcd001679.54E-71763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASNSHNNNK ENSNSSWTRM QNKQFERALA LYDRDTPDRW QNIAKVVGDK SAEEVKRHYE  60
ILLEDLSHIE SGRVPIPTYK SNQER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-281282676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233975.17e-58protein RADIALIS-like 3
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A151S1141e-56A0A151S114_CAJCA; Uncharacterized protein
STRINGGLYMA14G07280.29e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-33RAD-like 6