PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31364
Common NameKK1_030345
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 175aa    MW: 19406.8 Da    PI: 6.7841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31364genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.91.6e-1927430101
         DUF260  30 fanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                    fa+vh++FGa+nv +++k+l++ + r+ a+++lvy+Aear+rdP yG+vg+i++l+q+ ++++++l ++k++l
  C.cajan_31364   2 FACVHHVFGAANVGNVIKSLSDPQlRKLAVNTLVYQAEARVRDPTYGVVGHIMELEQRHRKVQEDLMRAKAQL 74 
                    89******************77666*****************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.716174IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-17271IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MFACVHHVFG AANVGNVIKS LSDPQLRKLA VNTLVYQAEA RVRDPTYGVV GHIMELEQRH  60
RKVQEDLMRA KAQLAQYLGP EGMRKEFSLC LGASSKGKNK CDETPEPHMS SFRRLCTDSD  120
VEMWDPFPPW ETFDDTQSGE KLSSDLGENN VGSSSLQGHG DKKGKRPADF PSTPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1327740114LOB family transfactor Ramosa2.1
5ly0_B1e-1327740114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234457.11e-130LOB domain-containing protein 21
TrEMBLA0A151RZR91e-129A0A151RZR9_CAJCA; LOB domain-containing protein 36
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1945945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-22ASYMMETRIC LEAVES 2-like 1