PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31366
Common NameKK1_030347
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 282aa    MW: 31447.5 Da    PI: 6.4368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31366genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.11.3e-4271061100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vh++FGasnv kll++l+  +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q ++el+ 
  C.cajan_31366   7 PCAACKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVAKLLNELSMAQREDAVKSLAYEAEARLRDPVYGCVGFISLLQQRLRQIQTELHN 102
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +k+e
  C.cajan_31366 103 AKKE 106
                    9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4646107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DNPQRFACVH RVFGASNVAK LLNELSMAQR  60
EDAVKSLAYE AEARLRDPVY GCVGFISLLQ QRLRQIQTEL HNAKKELSTY VSPQAMQVLL  120
ANPGMLPPML PHLHHQSMFN NCGGANNVAS QVLVAHGGGG GDQMVIRDTP PQEFLEAQQM  180
ALHQHQHQHQ VMFRNYEEQE FMKFDNGFEQ SGGGFGSQVE CLPPSLSLGS FENVGPYPVQ  240
QHGEQQHPME AQLLLTPQQQ QSQEQPHQQR CESEDGRTVV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4641218131LOB family transfactor Ramosa2.1
5ly0_B4e-4641218131LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234471.11e-180LOB domain-containing protein 36
TrEMBLA0A151RZM50.0A0A151RZM5_CAJCA; LOB domain-containing protein 36
STRINGGLYMA05G09950.21e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-58ASYMMETRIC LEAVES 2-like 1