PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31387

Common Name

KK1_033633

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

BBR-BPC

Protein Properties

Length: 238aa MW: 26374.8 Da PI: 8.8519

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31387	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	83.3	8.9e-26	1	115	1	104
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 mdd g+re r+k+ +y++a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerd+a+lqrd+a+aern+a++erdn++++l+++e+ C.cajan_31387 1 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDVALLQRDAAIAERNNAILERDNAIATLQYRET 96 9***999*9655544444432146************************************************************** PP GAGA_bind 90 sla....salpvgvqvlsg 104 sl+ ++p+g+q++++ C.cajan_31387 97 SLSsgsmPSCPPGCQISRD 115 *998887799999999876 PP
2	GAGA_bind	264.3	6.8e-81	122	238	185	301
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280 ska++k +dl+ln+vs+Dest+P+PvCsCt +lrqCYkWGnGGWqSaCCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dls C.cajan_31387 122 AVSKADWKGQDLGLNQVSYDESTMPAPVCSCTSVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLS 217 569******************************************************************************************* PP GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301 npvDLkdhWAkHGtn+++ti+ C.cajan_31387 218 NPVDLKDHWAKHGTNRYITIK 238 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	4.8E-14	1	96	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	3.0E-134	1	238	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.5E-77	118	238	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDDAGHRENG RHKADQYKSA QGQWLMQHQP SMKQIMAIMA ERDAAIQERN LAISEKKAAY 60 AERDVALLQR DAAIAERNNA ILERDNAIAT LQYRETSLSS GSMPSCPPGC QISRDDLNKQ 120 LAVSKADWKG QDLGLNQVSY DESTMPAPVC SCTSVLRQCY KWGNGGWQSA CCTTTLSMYP 180 LPAVPNKRHA RVGGRKMSGS AFNKLLSRLA AEGHDLSNPV DLKDHWAKHG TNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31387

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093610	1e-165	BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022037743.1	1e-119	protein BASIC PENTACYSTEINE6
Refseq	XP_022037744.1	1e-119	protein BASIC PENTACYSTEINE6
Refseq	XP_022037745.1	1e-119	protein BASIC PENTACYSTEINE6
Swissprot	Q8S8C6	2e-94	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A151RQK4	1e-178	A0A151RQK4_CAJCA; Uncharacterized protein
STRING	GSMUA_Achr1P03770_001	1e-115	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6905	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	8e-92	basic pentacysteine 4