PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31496
Common NameKK1_030848
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 491aa    MW: 54081.3 Da    PI: 5.8911
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31496genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-2370171199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++         ++ +   l+++d +g  W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF+  ++se
  C.cajan_31496  70 FSKILTPSDANNGGGFSVPRYCADSIfppldfrADPPYQ--YLSITDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDSVVFM--RDSE 161
                    88*****************************96444444..79***********************************************..5689 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++  v+++r+
  C.cajan_31496 162 GRVSVGIRRA 171
                    999****996 PP
2Auxin_resp69.97.7e-24207284182
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                    aa+aa+ +++FevvY+Pra+ ++Fvv++e v +a+k  +  G+R+k+ +etedss+ ++ +G+v++  ++d+      +Wr+L
  C.cajan_31496 207 AAEAAARNEPFEVVYYPRAGFADFVVSAEVVDEAMKYAWVGGTRVKIGIETEDSSRMTWfQGMVASACATDN-----GPWRML 284
                    7899***************************************************************99887.....555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-3062186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-3563173IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-2069170No hitNo description
PfamPF023624.0E-2170171IPR003340B3 DNA binding domain
PROSITE profilePS5086312.63370172IPR003340B3 DNA binding domain
SMARTSM010192.6E-2070172IPR003340B3 DNA binding domain
PfamPF065071.5E-20207284IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEHASPSHSP SLEPLLRSLP FVPCHVSSID LLADPYSDEV FAKLTLTPFP FHHNNANDHQ  60
NDHQSDVVSF SKILTPSDAN NGGGFSVPRY CADSIFPPLD FRADPPYQYL SITDVHGVAW  120
RFRHIYRGTP RRHLFTTGWS KFVNHKKLVA GDSVVFMRDS EGRVSVGIRR AARFAMKSEA  180
VEVEAAEGAG FSRSTTGRVS PKAVAAAAEA AARNEPFEVV YYPRAGFADF VVSAEVVDEA  240
MKYAWVGGTR VKIGIETEDS SRMTWFQGMV ASACATDNGP WRMLQVIWDE PEVLQNAKRV  300
SPWQVELASP TLALHTVFPP TKRFRADQGS GLLGEREGDP FPMSGLFPNS TMGHLNKKMF  360
CYDTFPAGMQ GARHDLFSAT NFSNFLNDNS YLYLGSSSLV NNTVQRLETV STELNIGSSQ  420
SDDLSPHSQS SLHSSCTEFT GTHNSNTKVG SGSILLFGKI IHPVEYDLHD ADCVEEGDRS  480
KETEGSDNLL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-5224306108388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31496
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-153AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234908.10.0auxin response factor 17
SwissprotQ84WU61e-137ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A151RY770.0A0A151RY77_CAJCA; Auxin response factor
STRINGXP_007141116.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-123auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]