PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31615
Common NameKK1_031772
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 486aa    MW: 52880 Da    PI: 4.6917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31615genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-11152174426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+f+++tGtCk+G +CkF+H+
  C.cajan_31615 152 EDCSFYLKTGTCKFGFNCKFNHP 174
                    89********************9 PP
2zf-CCCH27.74.6e-09200220525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C++++r+G Ck+G  CkF+H
  C.cajan_31615 200 ECKYYLRSGGCKFGKACKFNH 220
                    6******************** PP
3zf-CCCH41.13e-13244267326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +++C++++rtG Ck+G++CkF+H+
  C.cajan_31615 244 EKECPYYMRTGSCKFGANCKFNHP 267
                    689********************9 PP
4zf-CCCH308.9e-10376402127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++f++tG Ck+ ++CkF+H++
  C.cajan_31615 376 PGEPECSYFLKTGDCKFKSNCKFNHPK 402
                    5799*********************96 PP
5zf-CCCH30.56.4e-10424447326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +  C +++r+G Ck+G+ C++ H+
  C.cajan_31615 424 QNVCTYYSRYGLCKFGPACRYDHP 447
                    568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-6147176IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54148176IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8152174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4154173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601195223IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012195222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5199224IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-7200220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4201222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6240268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835241269IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6243268IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11244267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5247266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004375403IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4375402IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7377402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5380404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6419447IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737421449IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4421448IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7424447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEPSESESVS SSTKDPQLGE PSSPVRPLDH DPQPPDLNHV TQVDDALAGE LQNKVDLKDG  60
DETENKGSNL EEDGKGEGCV DGGGVVVEDD GGGGGGVVVD DDDGWNGGDE GCDWIENVNE  120
SDKVVGDVDG VENKDERSSG RAQQYPLRPE AEDCSFYLKT GTCKFGFNCK FNHPLRRKSQ  180
AKRDNAGERE EQAERSGQME CKYYLRSGGC KFGKACKFNH TRGKCSASPI AELNFLGLPI  240
RMGEKECPYY MRTGSCKFGA NCKFNHPDPT GGGDSPSGYG NGSSISLQGV SQSSISPWSS  300
TRALNESAPY VPMILSPNPG VSPQNSEWNG YQAPVYLSER SLHPSSTYVM NNPAMETNVY  360
MHNQKQMQVE EYPERPGEPE CSYFLKTGDC KFKSNCKFNH PKNRIARLPP CNLSDKGLPL  420
RPDQNVCTYY SRYGLCKFGP ACRYDHPINP PPSTMSGLDQ QSSYTNSASV DVAENGGASD  480
GNQLSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353401e-115AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235786.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A151RVR60.0A0A151RVR6_CAJCA; Zinc finger CCCH domain-containing protein 43
STRINGXP_007137964.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-133C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]