PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31741

Common Name

KK1_034626

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 254aa MW: 28490.6 Da PI: 8.2519

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31741	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.1	3.1e-48	8	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Pt+eel+ +yL+++++g+++++++vi+ vdi+ vePw+Lp+ +++++++w+fFs+r++++a+g r+nr+t+sgyWkatg+ +v C.cajan_31741 8 LPPGFRFYPTEEELLAFYLHNQLQGQRHDMSRVIPVVDIHGVEPWTLPSlageLCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGTPAHV 103 79********************************************545654445777******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +s++++++g+kkt+vfykg+ap+g+kt+W mhey+ C.cajan_31741 104 YSSHNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYK 138 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-51	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	49.88	8	166	IPR003441	NAC domain
Pfam	PF02365	2.8E-25	9	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSHNMEDLPP GFRFYPTEEE LLAFYLHNQL QGQRHDMSRV IPVVDIHGVE PWTLPSLAGE 60 LCRGDTEQWF FFSPRQEREA RGGRPNRTTA SGYWKATGTP AHVYSSHNKV IGMKKTMVFY 120 KGKAPTGRKT KWKMHEYKAI EHPPDQSNTT PPKLRHEFSL CRVYVISGSF RSFDRRPLEG 180 YSRAVDGDRG GASTSAQQRA PVVDGSSSSE TSHSGGGGAA LTSEAVAGSS GTNWNQSNNS 240 VEEPFWEWEQ LNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	8	164	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	8	164	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	8	164	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	8	164	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-39	8	164	20	166	NAC domain-containing protein 19
3swm_B	1e-39	8	164	20	166	NAC domain-containing protein 19
3swm_C	1e-39	8	164	20	166	NAC domain-containing protein 19
3swm_D	1e-39	8	164	20	166	NAC domain-containing protein 19
3swp_A	1e-39	8	164	20	166	NAC domain-containing protein 19
3swp_B	1e-39	8	164	20	166	NAC domain-containing protein 19
3swp_C	1e-39	8	164	20	166	NAC domain-containing protein 19
3swp_D	1e-39	8	164	20	166	NAC domain-containing protein 19
4dul_A	1e-39	8	164	17	163	NAC domain-containing protein 19
4dul_B	1e-39	8	164	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31741

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235234	1e-103	AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238156.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-89	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A151RN15	0.0	A0A151RN15_CAJCA; NAC domain-containing protein 90
STRING	GLYMA13G39160.1	1e-140	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-89	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]