PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31828

Common Name

KK1_031798

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 209aa MW: 22370.1 Da PI: 8.2667

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31828	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.1	1.1e-68	1	148	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaeskk 98 ++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++ ++skr+r++ ++ +++l+++ ++ +++ C.cajan_31828 1 MNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQHQQNQPPqfrGGDHSKRHRDN-IEGAASLACAPVPITTT-- 93 68*************************************************99988776556678888999986.88888999999998875.. PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le ++P+e++s+avfrcv+vs++d ++e +aYqtav+igGhvfkGiLydqG+e C.cajan_31828 94 GLELGQFPPELNSPAVFRCVKVSAMDAADERYAYQTAVNIGGHVFKGILYDQGVE 148 588999*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-65	1	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.7E-27	2	44	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-25	99	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MNCQDCGNQA KKDCAHLRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ LASLQHQQNQ 60 PPQFRGGDHS KRHRDNIEGA ASLACAPVPI TTTGLELGQF PPELNSPAVF RCVKVSAMDA 120 ADERYAYQTA VNIGGHVFKG ILYDQGVEGP YSAGCEGSSG GGGGEPQPLS LIAATATATT 180 SGNPFDPSLY TAPLNAFMAG TQFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31828

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235804.1	1e-156	protein SHI RELATED SEQUENCE 5
Swissprot	Q9SD40	2e-71	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A151RVK2	1e-154	A0A151RVK2_CAJCA; Uncharacterized protein
STRING	GLYMA14G40660.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-65	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]