PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31873

Common Name

KK1_034009

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 223aa MW: 24362.2 Da PI: 8.8789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31873	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.1	4.8e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C++lr++C+++C+l+p++ ++q++++ +++k++G++ +l+ll a+p++ + +++sl+yeA+ r+ +P yG++g+++++++ ++++ C.cajan_31873 4 SCNGCRILRKGCNENCILRPCLewinsSEAQANATLFLAKFYGRTGLLNLLMAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAA 99 6*******************9998777889************************************************************ PP DUF260 92 aelallkee 100 +e++l +++ C.cajan_31873 100 VEAVLSGSQ 108 9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.765	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MKLSCNGCRI LRKGCNENCI LRPCLEWINS SEAQANATLF LAKFYGRTGL LNLLMAAPQH 60 LGPVVFRSLL YEACGRLVNP TYGSLGLFWT GEWAQCEAAV EAVLSGSQIN GVAPSNSQTL 120 GTLGGDHILP TCDIRHVPKV KIVDDVRVKA GLKRVGPVVK PKPRVSTVDS TSLRQPNCES 180 KRMRVMEASF VSRDDLNRVG ETELNLELTL GFRCQSTSAN KTN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31873

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237637.1	1e-165	LOB domain-containing protein 40
Swissprot	Q9CA30	1e-57	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A151RPK3	1e-163	A0A151RPK3_CAJCA; LOB domain-containing protein 42
STRING	GLYMA20G24950.1	1e-121	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	6e-60	LOB domain-containing protein 42