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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | C.cajan_32145 | ||||||||
| Common Name | KK1_028765 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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| Family | ARF | ||||||||
| Protein Properties | Length: 887aa MW: 98375.6 Da PI: 5.9886 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 75.6 | 5.8e-24 | 155 | 256 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++
C.cajan_32145 155 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKS 247
99*********************999*****9555555.49************************************************..45777 PP
..EEEEE-S CS
B3 91 elvvkvfrk 99
+l+v+v+r
C.cajan_32145 248 QLRVGVRRV 256
78****985 PP
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| 2 | Auxin_resp | 114.3 | 1.1e-37 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++k++k++ ++vsvGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+++
C.cajan_32145 281 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQ 364
79********************************988********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.44E-46 | 143 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 6.5E-41 | 148 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.34E-23 | 154 | 255 | No hit | No description |
| PROSITE profile | PS50863 | 12.872 | 155 | 257 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.3E-21 | 155 | 256 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 8.5E-25 | 155 | 257 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.1E-32 | 281 | 364 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 8.2E-11 | 778 | 868 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 24.373 | 781 | 865 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 1.05E-8 | 783 | 860 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 887 aa Download sequence Send to blast |
MMASVEEKIK TGGVGVGVGG GMVVGGQSLV AEMKLLKEMQ EHSGFRKTLN SELWHACAGP 60 LVSLPQVGSL VFYFPQGHSE QVAASTRRTA TSQIPNYPNL PSQLLCQVQN VTLHADKETD 120 EIYAQMTLQP LNSEKEVFPI SDFGLKHSKH PSEFFCKTLT ASDTSTHGGF SVPRRAAEKL 180 FPPLDYTIQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL TTGWSLFVGS KRLRAGDSVL 240 FIRDEKSQLR VGVRRVNRQQ TTLPSSVLSA DSMHIGVLAA AAHAAANRSP FTIFYNPRAC 300 PSEFVIPLAK YRKSVFGTQV SVGMRFGMMF ETEESGKRRY MGTIVGISDV DPLRWPGSKW 360 RNIQVEWDEP GCGDKQNRVS VWEIETPESL FIFPSLTSSL KRPLQSGLLE NEWGMLRRPF 420 IRVPENGTME LSNSMPNLYS EHLMKMLFKP QLMNNNGAFL SVMQQESAAS RAPLQDMKAT 480 LAAESLKAQL ASTENMPLKN LHSQSIPDQA LNMQSVLKKC EVLPDHIVDY PSMEGCILEK 540 VAANPVNQQG LPSQFTFHNQ NQSPLLPQSS PWPMQPQLES SLPHPQMIDM AQADSALANG 600 MIPQLDIDEW MAYASSQPFV GQNKSTGPLS DLQDHASLQP QAMNPPLPST NQEVWDHYVK 660 NLKLLSQPDQ ITSITQPGMY GLNGIPSSNS TTMVDPSTSS TILDEFCTMK DREFQTPQDC 720 MVGNLSSSQD VQSQITSASL AESHAFSLRD NSGGTSSSHV DFDESSFLQN NSWQQVPAPI 780 RTYTKVQKAG SVGRSIDVTT FKNYEELIRA IECMFGLDGL LNDTKGSGWK LVYVDYENDV 840 LLVGDDPWEE FVGCVRCIRI LSPSEVQQMS EEGMKILNSG ALQGMNV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 389 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | C.cajan_32145 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020233090.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A151S3Z0 | 0.0 | A0A151S3Z0_CAJCA; Auxin response factor | ||||
| STRING | GLYMA14G40540.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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