PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_32331

Common Name

KK1_032596

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 404aa MW: 45563.4 Da PI: 9.0212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_32331	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.9e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ C.cajan_32331 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSe 108 579*************************.89***********9888999***********************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl C.cajan_32331 109 GSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 6677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.938	14	173	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEERNDGEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTPSSSS PKKYMDKNIP ANESWAICRI FKKTNATAQR 180 ALSHSWVSPL PETTTSDHML TTDRNSNQFF PSNMPLAKKT SLASQFCTFN HNDTQHLTTS 240 SSTPCPLDVV ASYNKPIINP LLYKPLDRLP FSNGDLSTGS IFSSPLETST TSAKSSMEYF 300 SSLLSSSVHG EFSKTSEGTT TNFGGLQEHH SNGYHVPILR DMQGTIGNHD NNVLVKIPNN 360 VNVPRVDDQQ LETGRSIGFP FAMPFNIGDA WKSNLLWDTS SLSL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEERNDGEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLTPSSSS PKKYMDKNIP ANESWAICRI FKKTNATAQR  180
ALSHSWVSPL PETTTSDHML TTDRNSNQFF PSNMPLAKKT SLASQFCTFN HNDTQHLTTS  240
SSTPCPLDVV ASYNKPIINP LLYKPLDRLP FSNGDLSTGS IFSSPLETST TSAKSSMEYF  300
SSLLSSSVHG EFSKTSEGTT TNFGGLQEHH SNGYHVPILR DMQGTIGNHD NNVLVKIPNN  360
VNVPRVDDQQ LETGRSIGFP FAMPFNIGDA WKSNLLWDTS SLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	180	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	180	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	16	180	22	174	NAC domain-containing protein 19
3swm_B	2e-53	16	180	22	174	NAC domain-containing protein 19
3swm_C	2e-53	16	180	22	174	NAC domain-containing protein 19
3swm_D	2e-53	16	180	22	174	NAC domain-containing protein 19
3swp_A	2e-53	16	180	22	174	NAC domain-containing protein 19
3swp_B	2e-53	16	180	22	174	NAC domain-containing protein 19
3swp_C	2e-53	16	180	22	174	NAC domain-containing protein 19
3swp_D	2e-53	16	180	22	174	NAC domain-containing protein 19
4dul_A	1e-53	16	180	19	171	NAC domain-containing protein 19
4dul_B	1e-53	16	180	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_32331

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236373.2	0.0	LOW QUALITY PROTEIN: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-110	FEZ_ARATH; Protein FEZ
TrEMBL	A0A151RTG3	0.0	A0A151RTG3_CAJCA; Putative NAC domain-containing protein 9
STRING	XP_007158658.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-112	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]