PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32499
Common NameKK1_031254
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 317aa    MW: 35733.5 Da    PI: 8.3576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32499genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.7e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +v+++G g+W++++++ g++R++k+c++rw +yl
    C.cajan_32499 14 KGPWTPEEDNKLVAYVQKHGHGNWNSVPAKAGLRRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding445.1e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++  Ed  +++++++lG++ W+ Ia++++  Rt++++k++w++
    C.cajan_32499  67 RGNFSFSEDRTIIQLHALLGNK-WSIIASHLP-ERTDNEIKNYWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129426.381965IPR017930Myb domain
SuperFamilySSF466891.27E-3211108IPR009057Homeodomain-like
SMARTSM007171.7E-161363IPR001005SANT/Myb domain
PfamPF002496.8E-191461IPR001005SANT/Myb domain
CDDcd001674.35E-131661No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2465117IPR009057Homeodomain-like
SMARTSM007171.0E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129418.10266116IPR017930Myb domain
PfamPF002494.3E-1367110IPR001005SANT/Myb domain
CDDcd001673.34E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGMMPCCEKV GLKKGPWTPE EDNKLVAYVQ KHGHGNWNSV PAKAGLRRCG KSCRLRWINY  60
LKPDIKRGNF SFSEDRTIIQ LHALLGNKWS IIASHLPERT DNEIKNYWNT NIKKRLIRMG  120
LDPITHKPKS QAYVGGDHSK HATNMSHMAQ WESARLEAEA RESMLQVGAS SFLPSQLVTS  180
KIPIQPFISS DSPSTTLNNT VYNMYALTLV TNHDLQSPIS TWSFPNKKCT VSTNVGQFTD  240
TEISLSYKVD GNVKESSSQT QKTMESYEPI LQDDDIMMAV EAFRTAGCES IHELFNNSAA  300
MEGLINYSSE RDMYKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-35AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235290.10.0transcription factor MYB16
SwissprotQ9LXF12e-86MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A151RXA60.0A0A151RXA6_CAJCA; Transcription factor MYB39
STRINGGLYMA02G12254.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-80myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]