PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_32959

Common Name

KK1_034935

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

YABBY

Protein Properties

Length: 136aa MW: 15374.3 Da PI: 10.0801

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_32959	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	142.8	3.8e-44	20	113	75	170
YABBY 75 lkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 k ++++l++++ +++ +s + ++ e d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl C.cajan_32959 20 AKLQKQHLSVQEACSKELGSSSKCKS-FEPVDHEQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 113 33333333333333333222222222.3567889999999.9****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-42	2	113	IPR006780	YABBY protein
SuperFamily	SSF47095	1.01E-8	57	106	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-5	61	107	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MGASLQTFPS QDTQQFSTVA KLQKQHLSVQ EACSKELGSS SKCKSFEPVD HEQPRIPPIR 60 PPEKRQRVPS AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNKQ 120 AKLDQGDGTQ KSNGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_32959

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095127	1e-162	BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238388.1	1e-98	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-51	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A151RMA4	6e-97	A0A151RMA4_CAJCA; Putative axial regulator YABBY 2
STRING	XP_007150001.1	4e-82	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-44	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]