PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33002
Common NameKK1_031970
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 190aa    MW: 21305.6 Da    PI: 8.2195
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33002genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.6e-4169145278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    Cq+e C adl+ ak+yhrrhkvCe hskap v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a
  C.cajan_33002  69 CQAEMCGADLTFAKRYHRRHKVCEPHSKAPFVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNA 145
                    **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-3561130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.88166143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-3767147IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3169142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEIKSGERRQ VSIEKVRRDS TVEVEDEEEE DESVACGEGG LGEDEKKKGG GGCGRRGSSG  60
GGGVSPPSCQ AEMCGADLTF AKRYHRRHKV CEPHSKAPFV MVAGLRQRFC QQCSRFHELA  120
EFDEAKRSCR RRLARHNERR RKSNAENCNE GCSGNKGQQP TESHCRNADD WGRIQMNITR  180
NSGYNSFHII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3457142184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0989280.0BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235915.11e-138squamosa promoter-binding protein 1
SwissprotQ387416e-39SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A151RVB81e-136A0A151RVB8_CAJCA; Squamosa promoter-binding-like protein 12
STRINGGLYMA13G35000.19e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.16e-28squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]