PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33239
Common NameKK1_035736
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 457aa    MW: 50685.4 Da    PI: 7.4831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33239genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16239285455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  C.cajan_33239 239 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 285
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-16238289No hitNo description
SuperFamilySSF474599.03E-21238313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-14239285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-21239293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
QNDDIMELLW QNGQVVMQSQ NQRPIRKPPR EIRSSEPQNY ANNQHLFMQE DEMASWLHYP  60
IHQDPPPLDH HNFSADIFYP PPNAALQCSV RADHLRHPPP RPPIPPPSRM HNFVHFSKHA  120
NASLSSKVAA AQPTVVDSCD TPVATADRVE TARASGGKPA APGGGRETAT CDMTVTSSPG  180
GSSGSAEPDQ REAAVDRKRK GREAEESEFQ SEDVDFESPE AKKQVRGSTS TKRSRAAEVH  240
NLSERRRRDR INEKMKALQE LIPRCNKSDK ASMLDEAIEY LKSLQLQVQM MSMGCGMVPM  300
MFPGIQQYMP PMGMGIGMGM GMEMGMGMNR PVMTFPNMLA SSTLPAATAA AHLGPRFPMP  360
PFHMPHVAAP DSSRVQAANH SDNTMLNSHG TLDPDQSRIP NFTDPYHQYL QLMQMQTFMK  420
FICMCGNQAM NQPNVSKPST SRGQENPEKH QSGKVPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239115.10.0transcription factor PIF1
TrEMBLA0A151RJW10.0A0A151RJW1_CAJCA; Transcription factor PIF1 (Fragment)
STRINGGLYMA13G19250.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-57phytochrome interacting factor 3-like 5