PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33512
Common NameKK1_038423
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 366aa    MW: 40816.2 Da    PI: 7.2148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33512genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-1763110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
    C.cajan_33512  63 RGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 110
                      89******************************99************97 PP
2Myb_DNA-binding46.58.5e-15121161648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    C.cajan_33512 121 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 161
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2254112IPR009057Homeodomain-like
PROSITE profilePS5129416.32258110IPR017930Myb domain
SuperFamilySSF466896.97E-2960157IPR009057Homeodomain-like
SMARTSM007178.4E-1362112IPR001005SANT/Myb domain
PfamPF002494.4E-1563110IPR001005SANT/Myb domain
CDDcd001677.67E-1165110No hitNo description
PROSITE profilePS5129424.404111165IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-24113166IPR009057Homeodomain-like
SMARTSM007171.2E-13115163IPR001005SANT/Myb domain
CDDcd001671.47E-11121161No hitNo description
PfamPF002491.4E-13121161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRHPSSSSST TTKNKRSNTS STTCDNSNNN IGGSANTNTN ANTNTNTNTN TTTPCCNKVG  60
LKRGPWTPEE DEVLANYIKK EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA  120
PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP  180
PSINIPSSSN KPPSMIISNH NPRHDITNIV NQGVQVHVHH LGQHQHQQTQ ACNPYDHNQN  240
VSNPVVPATV TTDDVSAMGF MDNEDCNDDI NINYYSDDVF SSFLNSLIND EAFAAQQHQV  300
QTEIPSERSI PLPCDDPLVS ITTAPHAPQG YDDDLGVLWE SPLVPATTFS QNNVNDPNIT  360
KRVLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25611655108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5979321e-152AB597932.1 Glycine max W2 mRNA for R2R3 MYB transcription factor, complete cds, cultivar: Harosoy.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202417.10.0transcription repressor MYB5
SwissprotQ388504e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A151RC880.0A0A151RC88_CAJCA; Transcription repressor MYB5
STRINGXP_007161463.11e-162(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-77myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]