PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33812
Common NameKK1_036736, KK1_036738, KK1_036739
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 76aa    MW: 8519.05 Da    PI: 10.0574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33812genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-10346755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   ++ r RR++i ++ +eL +l+P       +K++ a++L  A +Y+k+Lq
  C.cajan_33812  3 IAARERRKKISEKTQELGKLVPGG-----PKMNTADMLHAAAKYVKYLQ 46
                   56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.811145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-10251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-8249No hitNo description
SuperFamilySSF474596.94E-13355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
QSIAARERRK KISEKTQELG KLVPGGPKMN TADMLHAAAK YVKYLQAQVG MLELMISFEV  60
TFNLLSLVFD LVTNHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-48AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239913.16e-34transcription factor bHLH53
RefseqXP_020239915.16e-34transcription factor bHLH53
RefseqXP_020239916.16e-34transcription factor bHLH53
SwissprotQ9SA822e-16BH052_ARATH; Transcription factor bHLH52
TrEMBLA0A151RH158e-49A0A151RH15_CAJCA; Transcription factor bHLH52 (Fragment)
STRINGAES848894e-27(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.19e-19bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]