PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_34282

Common Name

KK1_034884

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Protein Properties

Length: 140aa MW: 15978.3 Da PI: 8.2163

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_34282	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.4	5.4e-13	57	111	43	96
S-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 43 grsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +sW++ ++ +s+r ++ t+GWk+F+ + Lk+gD ++F+l+++s+++ ++v C.cajan_34282 57 DKSWDLVYNG--QSNRqqkTFGTTGWKKFAVDTCLKVGDACIFELIQSSDKKIIFQV 111 59****55..4433335999**********************98888766654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-12	16	116	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.95E-10	17	115	No hit	No description
SMART	SM01019	0.0078	19	117	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-11	40	117	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.1E-11	57	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.925	58	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
PTTNLEWDEV KPLSGKPHYE HLLSRSNLSP RYNMGPSSNI LSELPSHEVP TILIYGDKSW 60 DLVYNGQSNR QQKTFGTTGW KKFAVDTCLK VGDACIFELI QSSDKKIIFQ VQILRSDIPS 120 KFLENEKLRG QIREMPIVLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_34282

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238352.1	1e-101	B3 domain-containing protein Os04g0386900
Refseq	XP_020238353.1	1e-101	B3 domain-containing protein Os04g0386900
TrEMBL	A0A151RM90	1e-99	A0A151RM90_CAJCA; B3 domain-containing protein Os04g0386900 family (Fragment)
STRING	GLYMA07G35040.3	3e-61	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40