PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_34417
Common NameKK1_035838
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 207aa    MW: 23418.6 Da    PI: 9.8
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_34417genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
    C.cajan_34417 13 KGPWTAEEDHILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYL 60
                     79******************************99************97 PP
2Myb_DNA-binding54.42.9e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
    C.cajan_34417  66 RGKFSKEEEDTILKLHQILGNR-WSAIAASLP-GRTDNEIKNFWHTHL 111
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.159860IPR017930Myb domain
SuperFamilySSF466894.3E-319107IPR009057Homeodomain-like
SMARTSM007172.3E-121262IPR001005SANT/Myb domain
PfamPF002491.8E-151360IPR001005SANT/Myb domain
CDDcd001673.23E-101560No hitNo description
PROSITE profilePS5129425.8761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-2764115IPR009057Homeodomain-like
SMARTSM007171.2E-1665113IPR001005SANT/Myb domain
PfamPF002493.7E-1666111IPR001005SANT/Myb domain
CDDcd001673.05E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRTPCCERMG LKKGPWTAEE DHILVSHIQR YGHGNWRALP KQAGLLRCGK SCRLRWINYL  60
RPDIKRGKFS KEEEDTILKL HQILGNRWSA IAASLPGRTD NEIKNFWHTH LKKRIEKSGV  120
LHNGNAYASS HMILQEAQDA SSTSSSVTGN MMIANYGLAS RKNPPFVGTG FYGAVSSNTF  180
MGNHDSCQLS EEMEFWYNIF IKSGQTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_34417
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1391441e-117BT139144.1 Lotus japonicus clone JCVI-FLLj-18J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239217.11e-156transcription factor MYB4
SwissprotQ7XBH41e-73MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A151RJI81e-155A0A151RJI8_CAJCA; Myb-related protein Myb4
STRINGXP_007147213.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-72myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]