PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_34569
Common NameKK1_030386
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22942.6 Da    PI: 9.4319
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_34569genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  C.cajan_34569  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59
                   79***********************************************96 PP
2K-box93.63.4e-3180157684
          K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                     + ++e ++e+++ e+akLk+++e Lq++qR+++G+dL+ Ls+keLq+Le+qL+++lk+iRs+Kn+l++e+i+el kk 
  C.cajan_34569  80 LV-ASEPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKV 157
                    44.58899*********************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.24161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-34290IPR002100Transcription factor, MADS-box
CDDcd002654.35E-42279No hitNo description
PRINTSPR004046.7E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-323859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-2584158IPR002487Transcription factor, K-box
PROSITE profilePS5129714.17387197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD  60
PCMERILERY ERYSYAERQL VASEPQTENW TLEHAKLKAR LEVLQKNQRN FMGQDLDGLS  120
IKELQNLEHQ LDSALKHIRS RKNQLMYESI SELHKKVSLV FIFLLSIGCK IAILLNESIE  180
GVDNFVLFLQ NWNNSCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q4e-22174173Myocyte-specific enhancer factor 2B
1tqe_R4e-22174173Myocyte-specific enhancer factor 2B
1tqe_S4e-22174173Myocyte-specific enhancer factor 2B
6c9l_A4e-22174173Myocyte-specific enhancer factor 2B
6c9l_B4e-22174173Myocyte-specific enhancer factor 2B
6c9l_C4e-22174173Myocyte-specific enhancer factor 2B
6c9l_D4e-22174173Myocyte-specific enhancer factor 2B
6c9l_E4e-22174173Myocyte-specific enhancer factor 2B
6c9l_F4e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_34569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2874560.0EU287456.1 Glycine max MADS box protein AP1a (AP1a) mRNA, complete cds.
GenBankKF8312410.0KF831241.1 Glycine max FULa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234510.11e-143truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S73e-91AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A151RZJ51e-142A0A151RZJ5_CAJCA; Agamous-like MADS-box protein AGL8
STRINGGLYMA06G22650.21e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-91AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]