PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_34992

Common Name

KK1_032750

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 380aa MW: 41164.5 Da PI: 6.6672

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_34992	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	38	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + C.cajan_34992 38 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 83 79****************************.*********985 PP
2	Myb_DNA-binding	57.9	2.3e-18	90	134	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ C.cajan_34992 90 RKPFTDEEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 134 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.375	33	84	IPR017930	Myb domain
SuperFamily	SSF46689	1.11E-30	35	131	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-15	37	86	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-16	38	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-26	39	91	IPR009057	Homeodomain-like
CDD	cd00167	2.93E-14	40	82	No hit	No description
PROSITE profile	PS51294	26.069	85	139	IPR017930	Myb domain
SMART	SM00717	2.2E-17	89	137	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	90	134	IPR001005	SANT/Myb domain
CDD	cd00167	3.42E-13	92	135	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-23	92	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEPEETAVAV ADDGSGDEGL LGLGGGGSSS GGGRDRVKGP WSPEEDAILS RLVSKFGARN 60 WSLIARGISG RSGKSCRLRW CNQLDPAVKR KPFTDEEDRI IVAAHAIHGN KWAAIARLLP 120 GRTDNAIKNH WNSTLRRRGV ELDKIKLESG NFMEDVSLDK AKASSEDTLS CGDVNSFKSS 180 EGRDVSSVEI MDDKNEDKAQ TEGQLHHEAR DPPTLFRPVA RVSAFSAYHS FDGIQPSASI 240 QRPVPMQGPI LQSTKPDMEF CKMLEGICGD QSVPHQCGHG CCAAQNGKKS KSSLLGPEFI 300 EFSEPPSFPN FELAAIATDI SNLAWLKSGL ENSSVKMMGS TSGRVISNGS QVHIPTLRED 360 WMMGVMKAIV VTIHFPCKCN

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEPEETAVAV ADDGSGDEGL LGLGGGGSSS GGGRDRVKGP WSPEEDAILS RLVSKFGARN  60
WSLIARGISG RSGKSCRLRW CNQLDPAVKR KPFTDEEDRI IVAAHAIHGN KWAAIARLLP  120
GRTDNAIKNH WNSTLRRRGV ELDKIKLESG NFMEDVSLDK AKASSEDTLS CGDVNSFKSS  180
EGRDVSSVEI MDDKNEDKAQ TEGQLHHEAR DPPTLFRPVA RVSAFSAYHS FDGIQPSASI  240
QRPVPMQGPI LQSTKPDMEF CKMLEGICGD QSVPHQCGHG CCAAQNGKKS KSSLLGPEFI  300
EFSEPPSFPN FELAAIATDI SNLAWLKSGL ENSSVKMMGS TSGRVISNGS QVHIPTLRED  360
WMMGVMKAIV VTIHFPCKCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-41	35	138	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_34992

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236498.1	0.0	transcription factor MYB1
Swissprot	Q42575	1e-107	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A151RT46	0.0	A0A151RT46_CAJCA; Transcription factor MYB44
STRING	GLYMA01G26650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-108	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]