PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_35277
Common NameKK1_036304
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 152aa    MW: 17020 Da    PI: 9.9377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_35277genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-182978255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  C.cajan_35277 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 78
                   69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-382992IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.0622986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-303087IPR001471AP2/ERF domain
CDDcd000186.47E-283088No hitNo description
PfamPF008473.2E-113078IPR001471AP2/ERF domain
PRINTSPR003676.7E-123041IPR001471AP2/ERF domain
PRINTSPR003676.7E-126888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKEEGLGDCC SSNSTITRKS EKRKQQEKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYA  60
TPVAAARAYD TAVFYLRGPS ARLNFPELLS QDDDVSTQQG NMSADSIRKK ATQVGARVDA  120
LQTALQSSSS HSASSHITSE KPDLNEFPKP ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152886463ATERF1
3gcc_A2e-152886463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724RKSEKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_35277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1513971e-136KX151397.1 Phaseolus vulgaris genotype BAT 477 DREB5A protein (DREB5A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239563.11e-111ethylene-responsive transcription factor RAP2-1
RefseqXP_029124691.11e-111ethylene-responsive transcription factor RAP2-1
SwissprotO221741e-50ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ8LC304e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A151RI681e-109A0A151RI68_CAJCA; Ethylene-responsive transcription factor RAP2-1
STRINGGLYMA06G04490.23e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-49DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]