PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_35772
Common NameKK1_035982
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 192aa    MW: 21434.8 Da    PI: 9.3915
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_35772genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.92.9e-4372148278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    Cq+e+C adls+ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++
  C.cajan_35772  72 CQAERCGADLSDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSNP 148
                    **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3664133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.69369146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.67E-4070150IPR004333Transcription factor, SBP-box
PfamPF031105.6E-3272145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEAKSVEKKR ALVEKVRKNS TVEEEVENEV EEEDESGVSL TEEEKKKGVS SSSVSGRRGS  60
SGGGGGVSPP SCQAERCGAD LSDAKRYHRR HKVCEFHSKA PVVVVAGLRQ RFCQQCSRFH  120
DLGEFDEAKR SCRRRLAGHN ERRRKSNPEV GNEGSKGQHH PKDTTHCRLV DERGRIQMNL  180
PGSSGYKSFN IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-3859145184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_35772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358171e-134AC235817.2 Glycine max clone GM_WBa0006O01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239326.11e-137squamosa promoter-binding protein 1
SwissprotQ387412e-42SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A151RJ481e-135A0A151RJ48_CAJCA; Squamosa promoter-binding protein 2
STRINGGLYMA06G36140.12e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-41squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]