PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_35914

Common Name

KK1_037023

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

YABBY

Protein Properties

Length: 199aa MW: 22227.2 Da PI: 5.0434

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_35914	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	198.9	2.1e-61	7	160	3	165
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 +f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla++ h + +++++e+ +++ +++++ C.cajan_35914 7 LFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASffpfHLLASVTH--------VEPKRGSSEDGANMTLNSYDASIM 94 6889*******************************************999777777787777........666677777777776666666555 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ e+e+v+++ +v++PPekrqr Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+ C.cajan_35914 95 THPD-----CEEENVTQMTNVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPP 160 5554.....56788889999************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-62	11	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-9	110	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-6	111	162	IPR009071	High mobility group box domain
CDD	cd01390	6.79E-6	119	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSTLNPLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFF 60 PFHLLASVTH VEPKRGSSED GANMTLNSYD ASIMTHPDCE EENVTQMTNV NKPPEKRQRT 120 PSAYNRFIKE EIKRLKAENP NMAHKEAFST AAKNWANFPP SQCKGDEDSC NLTDQLLELD 180 SNVEPSDAIE VKSYNSFQN

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_35914

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020240108.1	1e-142	axial regulator YABBY 4 isoform X1
Swissprot	Q9LDT3	9e-63	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A151RGA4	1e-147	A0A151RGA4_CAJCA; Axial regulator YABBY 4
STRING	GLYMA08G39290.2	1e-112	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-65	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]