PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_36197

Common Name

KK1_039149

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SBP

Protein Properties

Length: 142aa MW: 16620.2 Da PI: 6.3959

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_36197	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.1	2.2e-42	61	137	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C+adlseak+yhrrhkvCe h+ka +v ++gl+qrfCqqCsrfhelsefD++krsCr+rLa+hnerrrk++a C.cajan_36197 61 CQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFHELSEFDDTKRSCRTRLAGHNERRRKNAA 137 **************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	4.4E-57	1	142	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	7.8E-36	53	122	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.889	58	135	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-39	59	139	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-33	61	134	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDRSEGKRVL RYKEEEEDED EEEEEEIEMG FGEDGRRNKR AMTDLYGKRG SKGGSSMPPS 60 CQVDNCDADL SEAKQYHRRH KVCEYHAKAH SVHMAGLQQR FCQQCSRFHE LSEFDDTKRS 120 CRTRLAGHNE RRRKNAADYQ GE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-38	50	134	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_36197

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092024	1e-144	BT092024.1 Soybean clone JCVI-FLGm-9K12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203007.1	1e-101	squamosa promoter-binding-like protein 3 isoform X1
Swissprot	Q38741	4e-44	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A151RAJ5	1e-99	A0A151RAJ5_CAJCA; Squamosa promoter-binding-like protein
STRING	GLYMA07G31880.1	6e-67	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	4e-40	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]