PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36280
Common NameKK1_040024
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 372aa    MW: 39619.3 Da    PI: 7.2693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36280genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0894118126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC+ f++ GtC+y  +C+FaH+
  C.cajan_36280  94 FKTKLCCKFRA-GTCPYITNCNFAHS 118
                    69*********.*************8 PP
2zf-CCCH18.63.4e-06169194126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk + C+ f+    C+yGd+C+F H+
  C.cajan_36280 169 YKGRHCKKFYTEEGCPYGDSCTFLHD 194
                    77888********************7 PP
3zf-CCCH42.98.3e-14252277126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  C.cajan_36280 252 WKTRICNKWEMTGYCPFGNKCHFAHG 277
                    8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.24E-891124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1491126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8493120IPR000571Zinc finger, CCCH-type
SMARTSM003560.003593119IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-594118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-9166196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7167196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.086168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-16248281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-9249282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432251279IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-9251278IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10252277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDYAREGNVV QIIAAASGGG GGGDSWSGEQ ADWATEDEYR FWNSGNNGEG ETTASNSNYE  60
ARSRSGSEPP SKKSRNSQQE GNSNRSKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE  120
ELRRPPPNWQ EIVAAHEEEK AVLTEPREEF QIPTVGSSTF AGDMMQRSYK GRHCKKFYTE  180
EGCPYGDSCT FLHDEQSKNR ESVAISLGPG GYAGGGGSNG GGGGGGGGGG SGGGGAAASA  240
AGNGPNSKPS NWKTRICNKW EMTGYCPFGN KCHFAHGSTE LHRYGGGLME GENRDAASAV  300
STDTNKGVPS KASADNVVAA ATPVAHSDVY HIGVPSQRPS IVIQRPGQRT HHKWKGPDKI  360
SRIYGDWIDD IE
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203720.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-126C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A151R8960.0A0A151R896_CAJCA; Zinc finger CCCH domain-containing protein 56
STRINGGLYMA01G10610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-121C3H family protein