PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36298
Common NameKK1_039605
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 312aa    MW: 35714.9 Da    PI: 4.8688
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36298genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
    C.cajan_36298 16 RGPWSPSEDLKLIAFIQKYGHENWRALPKQAGLMRCGKSCRLRWINYL 63
                     89********************************************97 PP
2Myb_DNA-binding54.62.5e-1769113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e +++++k lG++ W++Ia++++ gRt++++k+ w+++
    C.cajan_36298  69 RGNFTQEEEETIIRLHKALGNK-WSKIASCLP-GRTDNEIKNVWNTH 113
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24766IPR009057Homeodomain-like
PROSITE profilePS5129414.6661163IPR017930Myb domain
SuperFamilySSF466893.41E-3014110IPR009057Homeodomain-like
SMARTSM007172.0E-121565IPR001005SANT/Myb domain
PfamPF002491.6E-141663IPR001005SANT/Myb domain
CDDcd001679.37E-101863No hitNo description
PROSITE profilePS5129424.09864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2667117IPR009057Homeodomain-like
SMARTSM007173.5E-1568116IPR001005SANT/Myb domain
PfamPF002493.1E-1569113IPR001005SANT/Myb domain
CDDcd001672.15E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRGRAPCCD KSQVKRGPWS PSEDLKLIAF IQKYGHENWR ALPKQAGLMR CGKSCRLRWI  60
NYLRPDVKRG NFTQEEEETI IRLHKALGNK WSKIASCLPG RTDNEIKNVW NTHIKKRKSS  120
NSKQDSDKQV SNELIIISES PKESSISLSS IESNIVTSSQ NVAYKAEQQL ASPLSYLGPY  180
DFGSISEEVD KPNHLFEIPW ESNCDFWNLL DDDNLGSFQS NEVQLGESPA SQNIILGEEI  240
VDDVEAKMWS HDFENEFGLV GEINESNKDH FLPKNCAIEP KMDHTQTFDF DDITRPESEL  300
DFSYIQLWPS WP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28161177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36298
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635312e-62JN863531.1 Lotus japonicus R2R3MYB transcription factor (MYB10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203379.10.0transcription factor MYB63
SwissprotQ9SA474e-82MYB58_ARATH; Transcription factor MYB58
TrEMBLA0A151R9250.0A0A151R925_CAJCA; Myb-related protein Zm1
STRINGXP_007149313.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-75myb domain protein 58
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]