PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36665
Common NameKK1_037330
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 215aa    MW: 24784.1 Da    PI: 9.5177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36665genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-161322071088
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    + k++rl++  kfa+++ +    ++ ++l++ +g++W+v +    +s++ ++ +GW++Fv++n+L egD ++++l++r+
  C.cajan_36665 132 TIKLDRLYVGSKFASKYLKA---NVGMMLQNCNGEQWDVSCVCHSGSRAKIIFRGWSKFVRDNDLSEGDACMLELIKRD 207
                    67899************433...346***************7766666666667********************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.60E-7147No hitNo description
PROSITE profilePS508639.418149IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-10156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-9259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743123215IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-15125207IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-7128214IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-14128206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-14130207No hitNo description
PfamPF023621.3E-14131207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRLKKCDKHV FFCTQWRHFV NYYSLSYGSH LVFRYEGNSK FRVLIFDITS AEICYPCKTR  60
GTNSNRKRSK VDDEDSNVNL KSESKTKKEE SDFSDRKQVQ SGYNENHSSN SSEISKDSAN  120
TFKPKNPFVT STIKLDRLYV GSKFASKYLK ANVGMMLQNC NGEQWDVSCV CHSGSRAKII  180
FRGWSKFVRD NDLSEGDACM LELIKRDPIV LKLTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1610821528139B3 domain-containing transcription factor VRN1
4i1k_B6e-1610821528139B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-46AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240313.11e-159B3 domain-containing transcription factor VRN1
TrEMBLA0A151RFA91e-158A0A151RFA9_CAJCA; B3 domain-containing transcription factor VRN1
STRINGXP_007148606.14e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-15B3 family protein