PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36937
Common NameKK1_041283
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 667aa    MW: 74944.2 Da    PI: 6.6009
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36937genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.2e-24106207199
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++ 
  C.cajan_36937 106 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGNDGD 199
                    99****************************9555555669************************************************..348888 PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    l+v+v+r+
  C.cajan_36937 200 LRVGVRRH 207
                    9****997 PP
2Auxin_resp94.12.3e-31232313183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k+ vGmRfk +fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  C.cajan_36937 232 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDDSPEaeKRFSGTIVGVEDISP-HWVNSKWRSLK 313
                    789***************6..9*******************************98622678**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-38101235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-39102221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-19104206No hitNo description
SMARTSM010197.3E-22106208IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167106208IPR003340B3 DNA binding domain
PfamPF023622.5E-22106207IPR003340B3 DNA binding domain
PfamPF065072.0E-29232313IPR010525Auxin response factor
PfamPF023095.1E-12533644IPR033389AUX/IAA domain
PROSITE profilePS5174525.365557638IPR000270PB1 domain
SuperFamilySSF542772.81E-12560633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSFNRAAATA GEEDELYEQQ WKACAGPHVE VPRAGQRVFY FPQGHMEQVK VSTNQELNQR  60
IPLFKLPSKI LCRVVNVHLL AEQETDEVYA QITLLPDSNV RIVHSFCKVL TASDTSTHGG  120
FSVLRKHATE CLPALDMSQS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT  180
SKRLVAGDTF VFLRGNDGDL RVGVRRHAPV QSSMPSSVIS SQSMHLGVLA TASHAVATQT  240
LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRFKTRFEG DDSPEAEKRF SGTIVGVEDI  300
SPHWVNSKWR SLKIQWDEPA SFPRPDRVSP WEIEPIFASV PTSSSQPAVV KNKRPRQANE  360
VPDLGDTPLP ASNFWDAGST QSDMTQLSVM AENKRSDNST HMWHHKQIDN SKSISNGISM  420
NQTETSWLAS PHSSGPPHLY HDTTDDSKSI SAWPISKTHS ERLNNDHLLD HVDKEINKVE  480
AATSCRLFGI ELIDHARNNS LCVENASVHA TNAFGVSSEY RTDVKHESDI SKASKEWKQE  540
NLQVPPKETQ IKQVCSRSCT KVQMQGVAVG RAVDLTTLDG YDQLVDELEM MFDIKGQLQH  600
RNKWEIVFTD DEGDMMLVGD DPWPEFCNMV RRIFICSSQD VHKLSSGSKL PLSSVEETVI  660
SSDTTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1571433617355Auxin response factor 1
4ldw_A1e-1571433617355Auxin response factor 1
4ldw_B1e-1571433617355Auxin response factor 1
4ldx_A1e-1571433617355Auxin response factor 1
4ldx_B1e-1571433617355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36937
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-77AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204775.10.0auxin response factor 9
RefseqXP_029125424.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A151R4N80.0A0A151R4N8_CAJCA; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9