PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_37021
Common NameKK1_006929, KK1_039090
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 111aa    MW: 12726.6 Da    PI: 9.0028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_37021genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-085073326
                   S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    +lC + + tG+C++G++Ck+ H+
  C.cajan_37021 50 PPLCFHLLNTGFCRHGESCKYLHP 73
                   58999999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-14444No hitNo description
PfamPF062203.3E-9539IPR013085Zinc finger, U1-C type
SuperFamilySSF902291.2E-64775IPR000571Zinc finger, CCCH-type
SMARTSM003560.00114774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0564775IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-65073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MPARKFYCDY CDKQFQDTPA DRKRHVKGIL HQQAKARWYD SFKQIPNPNP PLCFHLLNTG  60
FCRHGESCKY LHPTKSPIET TPSPGNVLNL PPSLQPPPQG GYPHLPFLDW G
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_37021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202940.12e-78zinc finger CCCH domain-containing protein 3
RefseqXP_020210656.12e-78zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-28C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A151U4N44e-77A0A151U4N4_CAJCA; Zinc finger CCCH domain-containing protein 3
STRINGXP_007145029.12e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-19C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]