PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_37500

Common Name

KK1_040386

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 223aa MW: 24902.9 Da PI: 9.0137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_37500	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H C.cajan_37500 67 FSCNYCQRKFYSSQALGGHQNAH 89 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.14E-6	64	94	No hit	No description
PROSITE profile	PS50157	11.427	67	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVTQTEKEGH KQPHDSVPRF LLDLSLSTKD SGDDSKPELN LLNCFHANFS ENSSESSHEN 60 ELDPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLARRGY KAGAADFGHT YSNMPFLPSH 120 GLYNKALGIQ VHSMINKPSF QTPFFGRCRS NGCQRQPLDS QPAIGNFRVG AETESSLVDS 180 VPKLGKFSTR LVTEGFGGYC FGSITHLKSK QEKLQKLDLS LKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_37500

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204006.1	1e-166	zinc finger protein 1
TrEMBL	A0A151R752	1e-165	A0A151R752_CAJCA; Zinc finger protein 3
STRING	XP_007135804.1	1e-133	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-38	C2H2 family protein