PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38105
Common NameKK1_037359
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 308aa    MW: 35342.9 Da    PI: 4.641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38105genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11145188654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  C.cajan_38105 145 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 188
                    589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15143201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9145188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-4146192No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15146200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00172234297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELHHDNDFL EEFMTLKPWD TNPCSQENEL FSSGWSFDYC FDQNSHHAFA PNSLSCQEVP  60
QNSSSYNTLD TPTPPFLAQE DYPLSMMEEE DPGLLGEELH CLDLQTTCKM EPNHSPEMPV  120
FNTDSCVERK DNREKKLQGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS KMDRTAILGD  180
TIDYMKELLE KINDLKQEIE VDSNMADIFK DLKSKEIFLR NSPKFDVERR NVNTRVEICC  240
AGKPGLLLST VNTLETLGLE IQQCVISCFN DFTVQASCSE EVKHDTVMSC EDIKQALFRS  300
AGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973250.0BT097325.1 Soybean clone JCVI-FLGm-16G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240366.10.0transcription factor bHLH61
SwissprotQ9LSL12e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A151RFI60.0A0A151RFI6_CAJCA; Transcription factor bHLH93
STRINGGLYMA14G36370.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-79beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]