PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38394
Common NameKK1_038972
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family YABBY
Protein Properties Length: 182aa    MW: 20426.3 Da    PI: 8.3873
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38394genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2052.8e-6361555168
          YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     ++e+vCyv+CnfCntilavsvP++s++++vtvrCGhC++llsvn+  + q+ + ++         ++++l +ee + k+  +++++++   +   
  C.cajan_38394   6 MATERVCYVHCNFCNTILAVSVPYSSMLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--------QKQHLSFEEPSSKELGSSSKCNKI--AP-- 89 
                    689*************************************************999995........667777777776666655554433..22.. PP

          YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                      e  ++e pr+pp irP ekr rvPsaynrfikeeiqrik snPdishreafs aaknWahfP+ihf
  C.cajan_38394  90 -FEAVEHEQPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKVSNPDISHREAFSSAAKNWAHFPHIHF 155
                    .2355778899999.9***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-697155IPR006780YABBY protein
SuperFamilySSF470959.43E-7102150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4110149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSMEMMATER VCYVHCNFCN TILAVSVPYS SMLTIVTVRC GHCANLLSVN MGASLQAFPP  60
QDPQKQHLSF EEPSSKELGS SSKCNKIAPF EAVEHEQPRI PPIRPTEKRH RVPSAYNRFI  120
KEEIQRIKVS NPDISHREAF SSAAKNWAHF PHIHFAGLKL DGNNKQAKLD QGEGAEKSNG  180
FY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908110.0BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202839.11e-136putative axial regulator YABBY 2 isoform X3
SwissprotQ9XFB03e-77YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A151RB101e-134A0A151RB10_CAJCA; Putative axial regulator YABBY 2
STRINGGLYMA12G10210.31e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-79YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]