PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38664
Common NameKK1_041671
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 253aa    MW: 29753.7 Da    PI: 9.2242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38664genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++v ++G g+W++++++ g++R++k+c++rw +yl
    C.cajan_38664 16 KGPWTSEEDKLLTEYVCLHGEGRWSSVSKYTGLNRSGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.81.9e-1670113247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  T+ E+e ++++++ lG++ W+tIa++++ gRt++++k++w+++
    C.cajan_38664  70 GQLTPLEEETIIELHATLGNK-WSTIAKYLP-GRTDNEIKNYWRTH 113
                      677999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4881167IPR017930Myb domain
SuperFamilySSF466895.24E-3113110IPR009057Homeodomain-like
SMARTSM007172.7E-151565IPR001005SANT/Myb domain
PfamPF002494.7E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221770IPR009057Homeodomain-like
CDDcd001671.95E-101863No hitNo description
PROSITE profilePS5129419.11668118IPR017930Myb domain
SMARTSM007171.3E-1368116IPR001005SANT/Myb domain
PfamPF002496.9E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2471117IPR009057Homeodomain-like
CDDcd001675.65E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVTMMGSLST EKGWKKGPWT SEEDKLLTEY VCLHGEGRWS SVSKYTGLNR SGKSCRLRWV  60
NYLRPGLKKG QLTPLEEETI IELHATLGNK WSTIAKYLPG RTDNEIKNYW RTHFGKKRER  120
SKHEKKLGRR KPKVLKQKQQ QPHIVSITSR EETKNQTKTF ETQNNMQQEM GFLYPTIEHQ  180
YHVPLMHEIE GFSSTWPNTI VDDDDDSWFS LWDFGERFED YVNQFSKCVM PNQATFGVGV  240
DSMQNHDKTF LFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261611727127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115130KKRERSKHEKKLGRRK
2116131KRERSKHEKKLGRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991001e-121BT099100.1 Soybean clone JCVI-FLGm-16H10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205004.20.0transcription factor MYB24
TrEMBLA0A151R3H70.0A0A151R3H7_CAJCA; Transcription factor MYB48
STRINGGLYMA08G27660.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-50myb domain protein 121