PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38667
Common NameKK1_041674
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 20104.1 Da    PI: 10.0596
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38667genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.9e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+ +qvtfskRr g+lKKA+E+SvLCda+ a+iifss+gkl+ yss
  C.cajan_38667  9 KRIENKTTQQVTFSKRRSGLLKKAHEISVLCDAQLALIIFSSKGKLFHYSS 59
                   79***********************************************96 PP
2K-box84.52.3e-2881157985
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                    ++++ +e+++ e+ kL  ++e L r+ R++lG+dL+sLs+keLq+LeqqL++slk+iR++Kn+++ ++i+el k+ +
  C.cajan_38667  81 ANNELQENWSFEYIKLTHKVEVLDRNVRNFLGDDLDSLSMKELQNLEQQLDTSLKRIRTRKNQVMNQSISELHKRVR 157
                    5667789*******************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-31289IPR002100Transcription factor, MADS-box
CDDcd002651.35E-37275No hitNo description
PRINTSPR004042.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003199.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2585158IPR002487Transcription factor, K-box
PROSITE profilePS5129713.08686172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTTQQVT FSKRRSGLLK KAHEISVLCD AQLALIIFSS KGKLFHYSSE  60
RSMEDVLERY ERSTHTELVG ANNELQENWS FEYIKLTHKV EVLDRNVRNF LGDDLDSLSM  120
KELQNLEQQL DTSLKRIRTR KNQVMNQSIS ELHKRVRSCV CVSLVFIKYI VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20184190MEF2C
5f28_B4e-20184190MEF2C
5f28_C4e-20184190MEF2C
5f28_D4e-20184190MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38667
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985711e-142BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205018.11e-110truncated transcription factor CAULIFLOWER A
SwissprotD7SMN66e-77FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A151R3N31e-121A0A151R3N3_CAJCA; Floral homeotic protein APETALA 1
STRINGGLYMA08G27680.12e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]