PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38782
Common NameKK1_040303
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SRS
Protein Properties Length: 245aa    MW: 26164 Da    PI: 8.5634
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38782genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021883.6e-58431987153
         DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel.kskkqsalsstkl 91 
                    +CqdCGn+akkdC ++RCRtCCk rg+dC+thvkstWvp+ +rrer +   +a++ aaa +          + a++ ++ ++ ++++ ++l++t++
  C.cajan_38782  43 ACQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWVPSIRRRERDTVVPSAAAAAAAVKrprplvgssqN-ATATSHSSNsNATTPKSLATTTT 137
                    7*********************************************98888877766666568899886531.22222222213444455555555 PP

         DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                    ss+++  ++ ++slP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  C.cajan_38782 138 SSHQQDASF-KQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 198
                    555555444.456***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-5543198IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-254485IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:1.20.5.6001.9E-471125IPR012897Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain
TIGRFAMsTIGR016245.4E-24150197IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0005249Molecular Functionvoltage-gated potassium channel activity
GO:0030955Molecular Functionpotassium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MCPEPNVPPK KGPIHVDHDH DQNHHKGLAE SDENGAFGPD FRACQDCGNR AKKDCIFRRC  60
RTCCKGRGYD CNTHVKSTWV PSIRRRERDT VVPSAAAAAA AVKRPRPLVG SSQNATATSH  120
SSNSNATTPK SLATTTTSSH QQDASFKQSL PGHVRAPAVF KCHRVSAIGN GEDEFAYLAT  180
VHISGHVFKG FLYDHGVDGK NANANANAVP CVSELQLGNN CSGKNRECSS AIGVPTTNDY  240
PASAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38782
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203913.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-51LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A151R7U50.0A0A151R7U5_CAJCA; Uncharacterized protein
STRINGXP_007148931.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.26e-43Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]