PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38909
Common NameKK1_039894
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 246aa    MW: 27752.3 Da    PI: 8.9617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38909genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-055577123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  C.cajan_38909 55 YSCNFCKREFRSAQALGGHMNVH 77
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-65282No hitNo description
PROSITE profilePS5015711.2195582IPR007087Zinc finger, C2H2
SMARTSM003550.00725577IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-65578IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEESQYLMWI KRKQILKSHI QQPFGASNNS SWEERAFAED AARILGGCIW PPRSYSCNFC  60
KREFRSAQAL GGHMNVHRRD RARLKQSLSP RNEHHHKNDC TNSTSKVSSS RPSTISTQEN  120
CYQPTMSASI NWGYHVGSPD SEPKRSVNIA REEALKGLGC NDYVETSLSV GQSSVFGQKL  180
PITSCEDEGI CYKRSKTSIP SLPVFLKPCS NDRHRTFQSA EFVLGLKPGM EDLDLELRLG  240
KPQKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135077229superman protein
2l1o_A8e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-100AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203585.20.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A151R8G60.0A0A151R8G6_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGGLYMA11G34285.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-27zinc-finger protein 10