PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38992
Common NameKK1_035470
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YC
Protein Properties Length: 155aa    MW: 17867.1 Da    PI: 5.6828
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38992genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC139.11.2e-4357155196
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql + w+kq   ie++t+f+ h+lPla+ikki+k+dedv+misaeaP++++kace+fi +lt r+w +a++n+rrtlkk di++a+++td+fdfl+
  C.cajan_38992  57 QLDNVWAKQykeIEETTNFNTHSLPLAKIKKIMKFDEDVRMISAEAPIVFAKACEMFIQDLTTRAWANADNNNRRTLKKMDITSAISKTDVFDFLL 152
                    68899*9999899*********************************************************************************** PP

          NF-YC  94 div 96 
                    div
  C.cajan_38992 153 DIV 155
                    *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.36E-315151IPR009072Histone-fold
PfamPF008083.5E-2079142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.3E-3380155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDQNQHGEAT REVGPPAHTN PPTQTAGPSN PSFYSREQQY VPPQYMYQLQ QNQLQQQLDN  60
VWAKQYKEIE ETTNFNTHSL PLAKIKKIMK FDEDVRMISA EAPIVFAKAC EMFIQDLTTR  120
AWANADNNNR RTLKKMDITS AISKTDVFDF LLDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-4365155393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_38992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124570.11e-114nuclear transcription factor Y subunit C-2
SwissprotQ9XE331e-45NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A151RKW11e-113A0A151RKW1_CAJCA; Nuclear transcription factor Y subunit C-2
STRINGGLYMA08G15700.17e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-37nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]