PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39403
Common NameKK1_042820
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 320aa    MW: 36873.4 Da    PI: 6.8757
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39403genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.3e-072532852254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp++e++++L +++gL+ +q+ +WF N+R +
  C.cajan_39403 253 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 285
                    69*****************************87 PP
2ELK29.32e-10206227122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  C.cajan_39403 206 ELKHELKQGYKEKIVDIREEIL 227
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-174185IPR005540KNOX1
PfamPF037902.1E-174384IPR005540KNOX1
SMARTSM012563.6E-2594149IPR005541KNOX2
PfamPF037916.2E-1898148IPR005541KNOX2
PfamPF037897.0E-7206227IPR005539ELK domain
SMARTSM011886.1E-4206227IPR005539ELK domain
PROSITE profilePS512139.969206226IPR005539ELK domain
PROSITE profilePS5007111.564226289IPR001356Homeobox domain
SMARTSM003891.6E-10228293IPR001356Homeobox domain
SuperFamilySSF466891.2E-15228294IPR009057Homeodomain-like
CDDcd000863.01E-11229289No hitNo description
Gene3DG3DSA:1.10.10.609.3E-25233290IPR009057Homeodomain-like
PfamPF059203.4E-18246285IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFHDHQIPF HRFADDQELS QNRDSLPPTW RQQNFLDQDL RDYKADILGH PLYDQLLSAH  60
VSCLRIATPV DQLPRIDAQL QQSHRVLHKY SALPHNAVVD DKDLDHFMTH YVLLLCAFKE  120
KLQQHVRVHA MEAVMACWDL EQSLQSLTGV SPGEGTGATM SDDEDEQAES NGNLYEGSLD  180
GADSLGFGPL VPTETERSLM ERVRHELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT  240
SLLKAWWQAH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHTN NPSSSSNSKS  300
KRKRYVNSHF SLLNSTPSVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282303RKRNWHTNNPSSSSNSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205850.10.0homeobox protein knotted-1-like 4
SwissprotP480001e-157KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480011e-157KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A151R0S30.0A0A151R0S3_CAJCA; Homeobox protein knotted-1-like 3
STRINGXP_007155117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-154KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]