PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_39689

Common Name

KK1_043061

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 248aa MW: 28313.4 Da PI: 6.951

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_39689	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.3	2.8e-44	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppG+rF Pt+eel+++yL++k+eg ++++vi+ vdiy ++P++Lp+ + + ++++w+fF++r++++a+g r++r t+sgyWkatg+ ++ C.cajan_39689 4 MPPGYRFYPTEEELISFYLHNKLEGVIKDMNRVIPVVDIYAYNPSQLPQisgeA-SLrDTEQWFFFIPRQESEARGGRPKRLTNSGYWKATGSPNH 98 79**************************99************645532.2235669****************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ C.cajan_39689 99 VFSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYT 134 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-47	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	47.738	4	162	IPR003441	NAC domain
Pfam	PF02365	1.7E-22	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MENMPPGYRF YPTEEELISF YLHNKLEGVI KDMNRVIPVV DIYAYNPSQL PQISGEASLR 60 DTEQWFFFIP RQESEARGGR PKRLTNSGYW KATGSPNHVF SSDNRIIGIK RTMVFYSGRA 120 PNGTKTDWKM NEYTAIKGEP SSSNKTVPTL RKEFSLCRVY KTSKCLRAFD RRPAPRRDVG 180 GYSGAQNNDE EQQKGSTSYD NPHHTVERRS ATSSPETSSN GEESTQMDVD NDPFLDWEKV 240 DLFLGSEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-37	3	161	16	164	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-37	3	161	16	164	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-37	3	161	16	164	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-37	3	161	16	164	NO APICAL MERISTEM PROTEIN
4dul_A	9e-37	3	161	16	164	NAC domain-containing protein 19
4dul_B	9e-37	3	161	16	164	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_39689

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	2e-86	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205969.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A151UFB8	0.0	A0A151UFB8_CAJCA; NAC domain-containing protein 90
STRING	GLYMA03G35570.1	1e-148	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-71	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]