PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39759
Common NameKK1_040929
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 444aa    MW: 46859.5 Da    PI: 8.5491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39759genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055476123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  C.cajan_39759 54 FVCEICNKGFQRDQNLQLHRRGH 76
                   89*******************88 PP
2zf-C2H211.90.00071160178523
                    TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                    dCg++Fsr++++ +H   +
  C.cajan_39759 160 DCGTVFSRRDSFITHRAFC 178
                    9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-65376No hitNo description
SMARTSM003550.0175476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495476IPR007087Zinc finger, C2H2
PfamPF121716.9E-55476IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035524095125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-6125150No hitNo description
SMARTSM00355160130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDNASTASGD ASVSSSGNQT KAATKKKRNL PGMPDPEAEV IALSPKTLLA TNRFVCEICN  60
KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV RKRVYVCPER TCVHHDPSRA LGDLTGIKKH  120
FCRKHGEKKW KCDKCSKKYA VHSDWKAHSK VCGTREYKCD CGTVFSRRDS FITHRAFCDA  180
LAEESSRSHT VVKPDSENES KVLNGDSPPT EATVVASAST AQSNSVVSSG LQTQNLELPE  240
NNNPIEEPEA VTTTLSGSCG NSTCSTSNGG ATSNKSSVFA RRADHPAAEI SAPSSSEAIS  300
LCLSTTNASP IFTPPPMPPP VMSATALLQK AAQMGATATN ASLLRSFGIM SSSSASASSD  360
GLQWGQQQVE PESSSGLKEL MMGTAPSMFG PKHTTLDFLG LGMAAGGTSG GGLSALITSI  420
GGGLDVTAAF GNGEFSGKDI GRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34126187364Zinc finger protein JACKDAW
5b3h_F8e-34126187364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39759
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204449.10.0zinc finger protein ENHYDROUS
SwissprotQ9LVQ71e-167IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A151R5P50.0A0A151R5P5_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA16G25550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-107C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]