PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39770
Common NameKK1_041246
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 150aa    MW: 16209.3 Da    PI: 9.6846
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39770genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1029.9e-32201176103
            TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaakskk 99 
                    + ++++hTkv+gR RRv l+ +caar+F+L++eLG+++ ++ti WLl+qa+pai+++tg++ s +s++ a++sss++  ++++  ++ +  ++ ++
  C.cajan_39770  20 KGNKDRHTKVNGRERRVLLPPLCAARVFQLTRELGYKTHGETIGWLLRQAEPAIIAATGNGVSLSSSMVASTSSSEG--KNIAgpREDSLGNNASN 113
                    5689********************************************************88888666333333333..34442233333332222 PP

            TCP 100 sqks 103
                    ++++
  C.cajan_39770 114 KSQQ 117
                    2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2721113IPR005333Transcription factor, TCP
PROSITE profilePS5136923.6722276IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNSETPSPLK ATSTKLPPQK GNKDRHTKVN GRERRVLLPP LCAARVFQLT RELGYKTHGE  60
TIGWLLRQAE PAIIAATGNG VSLSSSMVAS TSSSEGKNIA GPREDSLGNN ASNKSQQDSL  120
PLDFDLLANY NLEFSANEIA MIQSLMTRLA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204756.11e-107transcription factor PCF1
SwissprotQ9FTA23e-27TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A151R4T21e-106A0A151R4T2_CAJCA; Transcription factor TCP21
STRINGGLYMA11G20201.11e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-28TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]