PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39851
Common NameKK1_037446
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 141aa    MW: 15856.8 Da    PI: 8.778
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39851genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.34.7e-25454258
    ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                   ++++Y+eCl+NhAaslG++a+DGCgEf+ +        +l+C ACgCHRnFHR+   
  C.cajan_39851  4 SNCVYRECLRNHAASLGSYATDGCGEFTLQ------EGSLQCGACGCHRNFHRKAAC 54
                   6899*************************8......469***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.8E-20652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-16851IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-21852IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.055852IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.51E-1561126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-2861128IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-2867125IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MENSNCVYRE CLRNHAASLG SYATDGCGEF TLQEGSLQCG ACGCHRNFHR KAACEGAEVV  60
GGGERSKKRF RTKFSAEQKE KMVVFAEKLG WKLQRREVDD EIERFCRSVG VSRQVFKVWM  120
HNHKNNSNSS NSSANLSSLT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-22661301679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240429.11e-100zinc-finger homeodomain protein 3
SwissprotQ9SB612e-34ZHD2_ARATH; Zinc-finger homeodomain protein 2
SwissprotQ9ZPW73e-34ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A151RF534e-99A0A151RF53_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGXP_007160565.12e-66(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-28homeobox protein 32
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]